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sci-physics/SU2: unbundle everything
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com>
This commit is contained in:
Alessandro Barbieri
parent
708e6f9ec8
commit
b220eda93c
196
sci-physics/SU2/SU2-7.2.0-r1.ebuild
Normal file
196
sci-physics/SU2/SU2-7.2.0-r1.ebuild
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@ -0,0 +1,196 @@
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# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..9} )
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inherit meson python-single-r1
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DESCRIPTION="SU2: An Open-Source Suite for Multiphysics Simulation and Design"
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HOMEPAGE="https://su2code.github.io/"
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SRC_URI="
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https://github.com/su2code/SU2/archive/v${PV}.tar.gz -> ${P}.tar.gz
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test? ( https://github.com/su2code/TestCases/archive/v${PV}.tar.gz -> ${P}-TestCases.tar.gz )
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tutorials? ( https://github.com/su2code/Tutorials/archive/v${PV}.tar.gz -> ${P}-Tutorials.tar.gz )
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"
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LICENSE="
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LGPL-2.1
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tecio? ( tecio_license_agreement )
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"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="autodiff cgns directdiff librom mixed-precision mkl +mpi mpp openblas openmp parmetis pastix python tecio test tutorials"
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# TODO: do not force openblas
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RDEPEND="
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${PYTHON_DEPS}
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cgns? ( sci-libs/cgnslib:= )
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librom? ( sci-libs/libROM )
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mkl? ( sci-libs/mkl )
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mpi? (
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sci-libs/metis
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virtual/mpi[cxx]
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)
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mpp? ( sci-libs/Mutationpp )
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openblas? ( sci-libs/openblas )
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parmetis? ( sci-libs/parmetis )
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pastix? (
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<sci-libs/pastix-6[mpi?]
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sci-libs/scotch
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)
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python? ( $(python_gen_cond_dep 'dev-python/mpi4py[${PYTHON_USEDEP}]') )
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"
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DEPEND="
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${RDEPEND}
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dev-cpp/cli11
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autodiff? (
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sci-libs/CoDiPack
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mpi? ( >sci-libs/MeDiPack-1.2 )
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openmp? ( sci-libs/OpDiLib )
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)
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directdiff? (
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sci-libs/CoDiPack
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mpi? ( >sci-libs/MeDiPack-1.2 )
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)
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tecio? ( >=dev-libs/boost-1.76.0:= )
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test? ( dev-cpp/catch:0 )
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"
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BDEPEND="
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python? ( dev-lang/swig )
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virtual/pkgconfig
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"
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# Tests fail with FEATURES="network-sandbox" for most versions of openmpi and mpich it with error:
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# "No network interfaces were found for out-of-band communications.
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# We require at least one available network for out-of-band messaging."
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PROPERTIES="test_network"
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RESTRICT="!test? ( test )"
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DOCS=( "README.md" "SU2_PY/documentation.txt" )
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REQUIRED_USE="
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${PYTHON_REQUIRED_USE}
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parmetis? ( mpi )
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pastix? (
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mpi
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|| ( openblas mkl )
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)
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?? ( openblas mkl )
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?? ( directdiff pastix )
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"
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PATCHES=(
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"${FILESDIR}/${PN}-7.0.4-unbundle_boost.patch"
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"${FILESDIR}/${PN}-7.1.0-fix-env.patch"
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"${FILESDIR}/${PN}-7.2.0-system-libraries.patch"
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"${FILESDIR}/${PN}-7.2.0-DESTDIR.patch"
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)
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src_unpack() {
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unpack "${P}.tar.gz"
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if use test ; then
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einfo "Unpacking ${P}-TestCases.tar.gz to /var/tmp/portage/sci-physics/${P}/work/${P}/TestCases"
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tar -C "${P}"/TestCases --strip-components=1 -xzf "${DISTDIR}/${P}-TestCases.tar.gz" || die
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fi
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if use tutorials ; then
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einfo "Unpacking ${P}-Tutorials.tar.gz to /var/tmp/portage/sci-physics/${P}/work/${P}"
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mkdir "${P}"/Tutorials || die
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tar -C "${P}"/Tutorials --strip-components=1 -xzf "${DISTDIR}/${P}-Tutorials.tar.gz" || die
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fi
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}
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src_prepare(){
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rm -rf externals/{CLI11,autotools,catch2,cgns,codi,medi,meson,metis,ninja,parmetis} || die
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default
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# boost Geometry requires c++14 since >=boost-1.75
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sed -i -e 's:cpp_std=c++11:cpp_std=c++14:' meson.build || die
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# Force Disable parmetis support in meson.build (configure.ac has optional switch)
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use !parmetis && { sed -i -e "/parmetis/Id" meson.build || die ; }
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# Disable python-wrapper tests
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sed -i "/append(pywrapper_/s/./#&/" TestCases/parallel_regression.py || die
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# Copy absence mesh file
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if use test ; then
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cp "${S}/TestCases/nonequilibrium/viscwedge/viscwedge.su2" "${S}/TestCases/nonequilibrium/axi_visccone/" || die
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fi
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}
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src_configure() {
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if use mpi ; then
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export CC=mpicc
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export CXX=mpicxx
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fi
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local emesonargs=(
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$(meson_feature mpi with-mpi)
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$(meson_use autodiff enable-autodiff)
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$(meson_use cgns enable-cgns)
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$(meson_use directdiff enable-directdiff)
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$(meson_use librom enable-librom)
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$(meson_use mixed-precision enable-mixedprec)
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$(meson_use mkl enable-mkl)
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$(meson_use mpi custom-mpi)
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$(meson_use mpp enable-mpp)
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$(meson_use openblas enable-openblas)
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$(meson_use openmp with-omp)
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$(meson_use pastix enable-pastix)
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$(meson_use python enable-pywrapper)
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$(meson_use tecio enable-tecio)
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$(meson_use test enable-tests)
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)
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meson_src_configure
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}
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src_test() {
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ln -s ../../${P}-build/SU2_CFD/src/SU2_CFD SU2_PY/SU2_CFD || die
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ln -s ../../${P}-build/SU2_DEF/src/SU2_DEF SU2_PY/SU2_DEF || die
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ln -s ../../${P}-build/SU2_DOT/src/SU2_DOT SU2_PY/SU2_DOT || die
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ln -s ../../${P}-build/SU2_GEO/src/SU2_GEO SU2_PY/SU2_GEO || die
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ln -s ../../${P}-build/SU2_SOL/src/SU2_SOL SU2_PY/SU2_SOL || die
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export SU2_RUN="${S}/SU2_PY"
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export SU2_HOME="${S}"
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export PATH="${PATH}:${SU2_RUN}"
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export PYTHONPATH="${PYTHONPATH}:${SU2_RUN}"
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einfo "Running UnitTests ..."
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../${P}-build/UnitTests/test_driver || die
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pushd TestCases/ || die
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if use mpi ; then
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if use tutorials ; then
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${EPYTHON} tutorials.py || die
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fi
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${EPYTHON} parallel_regression.py || die
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else
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${EPYTHON} serial_regression.py || die
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fi
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popd || die
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}
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src_install() {
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DESTDIR="${D}" meson_src_install
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mkdir -p "${D}$(python_get_sitedir)/SU2_PY" || die
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if use python; then
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mv "${ED}"/usr/bin/{pysu2.py,_pysu2.so} -t "${D}$(python_get_sitedir)/SU2_PY" || die
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fi
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mv "${ED}"/usr/bin/{FSI_tools,SU2,SU2_Nastran} -t "${D}$(python_get_sitedir)" || die
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mv "${ED}"/usr/bin/*.py -t "${D}$(python_get_sitedir)/SU2_PY" || die
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python_optimize "${D}/$(python_get_sitedir)"
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if use tutorials ; then
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insinto "/usr/share/${PN}"
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doins -r Tutorials
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fi
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local SU2_RUN="$(python_get_sitedir)/SU2_PY"
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echo SU2_RUN="${SU2_RUN}" > 99_SU2
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echo PATH="${SU2_RUN}" >> 99_SU2
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echo PYTHONPATH="${SU2_RUN}" >> 99_SU2
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doenvd 99_SU2
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}
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@ -1,6 +1,5 @@
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diff -Naur old_static/externals/tecio/meson.build new_shared/externals/tecio/meson.build
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--- old_static/externals/tecio/meson.build 2020-05-09 16:35:10.000000000 +0300
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+++ new_shared/externals/tecio/meson.build 2020-05-10 11:52:36.000000000 +0300
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--- a/externals/tecio/meson.build
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+++ b/externals/tecio/meson.build
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@@ -1,15 +1,15 @@
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-check_dir = run_command(python,
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- script_path / 'check_dir.py',
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@ -1,6 +1,5 @@
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diff -Naur old_env/UnitTests/meson.build new_env/UnitTests/meson.build
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--- old_env/UnitTests/meson.build 2020-06-15 17:03:43.000000000 +0300
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+++ new_env/UnitTests/meson.build 2020-06-15 17:04:35.000000000 +0300
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--- a/UnitTests/meson.build
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+++ b/UnitTests/meson.build
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@@ -26,7 +26,7 @@
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test_driver = executable(
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'test_driver',
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6
sci-physics/SU2/files/SU2-7.2.0-DESTDIR.patch
Normal file
6
sci-physics/SU2/files/SU2-7.2.0-DESTDIR.patch
Normal file
@ -0,0 +1,6 @@
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--- a/SU2_PY/pySU2/install.sh
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+++ b/SU2_PY/pySU2/install.sh
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@@ -1,2 +1,2 @@
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#!/bin/sh
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-cp "$1/$2" "${MESON_INSTALL_PREFIX}/bin/$2"
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+cp "$1/$2" "${DESTDIR}/${MESON_INSTALL_PREFIX}/bin/$2"
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165
sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
Normal file
165
sci-physics/SU2/files/SU2-7.2.0-system-libraries.patch
Normal file
@ -0,0 +1,165 @@
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--- a/meson.build
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+++ b/meson.build
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@@ -10,7 +10,7 @@
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python = pymod.find_installation()
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su2_cpp_args = []
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-su2_deps = [declare_dependency(include_directories: 'externals/CLI11')]
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+su2_deps = [declare_dependency(include_directories: '/usr/include/CLI')]
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default_warning_flags = []
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if build_machine.system() != 'windows'
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@@ -52,7 +52,7 @@
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endif
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if get_option('enable-autodiff') or get_option('enable-directdiff')
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- codi_dep = [declare_dependency(include_directories: 'externals/codi/include')]
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+ codi_dep = [declare_dependency(include_directories: '/usr/include/codi')]
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codi_rev_args = ['-DCODI_REVERSE_TYPE']
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codi_for_args = ['-DCODI_FORWARD_TYPE']
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endif
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@@ -69,7 +69,8 @@
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# add cgns library
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if get_option('enable-cgns')
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- subdir('externals/cgns')
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+ cpp = meson.get_compiler('cpp')
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+ cgns_dep = cpp.find_library('cgns')
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su2_deps += cgns_dep
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su2_cpp_args += '-DHAVE_CGNS'
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endif
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@@ -91,23 +92,19 @@
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su2_deps += mpi_dep
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su2_cpp_args += '-DHAVE_MPI'
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- # compile metis
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- subdir('externals/metis')
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-
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# add metis dependency
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+ metis_dep = dependency('metis')
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su2_deps += metis_dep
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su2_cpp_args += '-DHAVE_METIS'
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- # compile parmetis
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- subdir('externals/parmetis')
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-
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# add parmetis dependency
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+ parmetis_dep = dependency('parmetis')
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su2_deps += parmetis_dep
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su2_cpp_args += '-DHAVE_PARMETIS'
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# add medi dependency
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if get_option('enable-autodiff') or get_option('enable-directdiff')
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- codi_dep += declare_dependency(include_directories: ['externals/medi/include', 'externals/medi/src'])
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+ codi_dep += declare_dependency(include_directories: ['/usr/share/MeDiPack/include', '/usr/share/MeDiPack/src'])
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endif
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endif
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@@ -117,7 +114,7 @@
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# add opdi dependency
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if get_option('enable-autodiff')
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- codi_dep += declare_dependency(include_directories: 'externals/opdi/include')
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+ codi_dep += declare_dependency(include_directories: '/usr/include/opdi')
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if get_option('opdi-backend') == 'macro'
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su2_cpp_args += '-DFORCE_OPDI_MACRO_BACKEND'
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@@ -185,14 +182,10 @@
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if get_option('enable-librom')
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- assert(get_option('librom_root')!='',
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- 'Must specify librom folder (-Dlibrom_root=path/to/libROM)')
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-
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su2_cpp_args += '-DHAVE_LIBROM'
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- librom_root = get_option('librom_root')
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- librom_dep = declare_dependency(include_directories: librom_root,
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- link_args: ['-L'+librom_root+'/build', '-lROM'])
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+ librom_dep = declare_dependency(include_directories: '/usr/include/libROM',
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+ link_args: ['-lROM'])
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su2_deps += librom_dep
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@@ -205,19 +198,17 @@
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endif
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endforeach
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-catch2_dep = declare_dependency(include_directories: 'externals/catch2/')
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+catch2_dep = declare_dependency(include_directories: '/usr/include/catch2/')
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if get_option('enable-mpp')
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- cmake = import('cmake')
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- mpp_subproj = cmake.subproject('Mutationpp')
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- mpp_dep = mpp_subproj.dependency('mutation++')
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+ mpp_dep = dependency('mutation++')
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su2_deps += mpp_dep
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su2_cpp_args += '-DHAVE_MPP'
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endif
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if omp and get_option('enable-autodiff')
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py = find_program('python3','python')
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- p = run_command(py, 'externals/opdi/syntax/check.py', 'su2omp.syntax.json', 'Common', 'SU2_CFD', '-p', '*.hpp', '*.cpp', '*.inl', '-r', '-q')
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+ p = run_command(py, '/usr/share/OpDiLib/syntax/check.py', 'su2omp.syntax.json', 'Common', 'SU2_CFD', '-p', '*.hpp', '*.cpp', '*.inl', '-r', '-q')
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if p.returncode() != 0
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error(p.stdout())
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endif
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@@ -280,20 +271,4 @@
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get_option('enable-autodiff'), get_option('enable-directdiff'), get_option('enable-pywrapper'), get_option('enable-mkl'),
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get_option('enable-openblas'), get_option('enable-pastix'), get_option('enable-mixedprec'), get_option('enable-librom'), meson.build_root().split('/')[-1]))
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-if get_option('enable-mpp')
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- message(''' To run SU2 with Mutation++ library, add these lines to your .bashrc file:
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-
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- export MPP_DATA_DIRECTORY=$SU2_HOME/subprojects/Mutationpp/data
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- export LD_LIBRARY_PATH=$SU2_HOME/<build_dir>/subprojects/Mutationpp
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-
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- ''')
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-endif
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-
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-if get_option('enable-librom')
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- message(''' To run SU2 with libROM library, add this line to your .bashrc file:
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-
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- export LD_LIBRARY_PATH=@0@/build/:$LD_LIBRARY_PATH
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-
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- '''.format(get_option('librom_root')))
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-
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endif
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--- a/SU2_CFD/include/solvers/CSolver.hpp
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+++ b/SU2_CFD/include/solvers/CSolver.hpp
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@@ -57,9 +57,9 @@
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#include "../variables/CVariable.hpp"
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#ifdef HAVE_LIBROM
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-#include "BasisGenerator.h"
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-#include "QDEIM.h"
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-#include "DEIM.h"
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+#include "linalg/BasisGenerator.h"
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+#include "hyperreduction/QDEIM.h"
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+#include "hyperreduction/DEIM.h"
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#endif
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using namespace std;
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--- a/SU2_CFD/include/SU2_CFD.hpp
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+++ b/SU2_CFD/include/SU2_CFD.hpp
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@@ -29,7 +29,7 @@
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#include "../../Common/include/parallelization/mpi_structure.hpp"
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#include "../../Common/include/parallelization/omp_structure.hpp"
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-#include "CLI11.hpp"
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+#include "CLI.hpp"
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#include "drivers/CDriver.hpp"
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#include "drivers/CSinglezoneDriver.hpp"
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--- a/SU2_GEO/include/SU2_GEO.hpp
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+++ b/SU2_GEO/include/SU2_GEO.hpp
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@@ -38,7 +38,7 @@
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#include "../../Common/include/geometry/CPhysicalGeometry.hpp"
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#include "../../Common/include/CConfig.hpp"
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-#include "../../../Common/include/grid_movement/CSurfaceMovement.hpp"
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-#include "../../../Common/include/grid_movement/CFreeFormDefBox.hpp"
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+#include "../../Common/include/grid_movement/CSurfaceMovement.hpp"
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+#include "../../Common/include/grid_movement/CFreeFormDefBox.hpp"
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using namespace std;
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@ -6,11 +6,16 @@
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<name>Sergey Torokhov</name>
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</maintainer>
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<use>
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<flag name="cgns">Build with CGNS support (bundled)</flag>
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<flag name="autodiff">Enable support for reverse automatic differentiation</flag>
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||||
<flag name="cgns">Build with CGNS support</flag>
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<flag name="directdiff">Enable support for forward automatic differentiation</flag>
|
||||
<flag name="librom">Enable LLNL libROM support</flag>
|
||||
<flag name="mixed-precision">Use single precision floating point arithmetic for sparse algebra</flag>
|
||||
<flag name="mkl">Enable Intel MKL support</flag>
|
||||
<flag name="mpp">Enable Mutation++ library support</flag>
|
||||
<flag name="openblas">Enable OpenBLAS support</flag>
|
||||
<flag name="parmetis">Enable Parmetis support (Metis support is always on)</flag>
|
||||
<flag name="openblas">Enable BLAS and LAPACK support via OpenBLAS</flag>
|
||||
<flag name="parmetis">Enable Parmetis support</flag>
|
||||
<flag name="pastix">Enable PaStiX support</flag>
|
||||
<flag name="tecio">Enable TECIO support</flag>
|
||||
<flag name="tutorials">Install Tutorials files</flag>
|
||||
</use>
|
||||
|
||||
Loading…
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Reference in New Issue
Block a user