This commit is contained in:
Yingjie Wang 2024-02-05 16:43:04 -05:00
commit 1bf03503b0
97 changed files with 631996 additions and 0 deletions

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.gitignore vendored Normal file
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.venv
parfiles/
*.csv
*.log

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{
"editor.rulers": [80],
"editor.tabSize": 2
}

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Teuk_psi4.wl Normal file
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(*
This script is used to get a analytical formula of \psi_4,
and save to a file.
*)
(*
Usage: Please set the fowllowing variables from outside as
command line arguments, like this:
wolframscript -file Teuk_psi4.wl m a L n in|out [filename]
for example:
wolframscript -file Teuk_psi4.wl 0 1e-8 1 1 out
if filename is not given, it's "./psi4_analytical.txt" by default.
*)
(* variable name : description *)
(* Begin of variables *)
(* m : the Teukolsky multiple order *)
(* a : wave amplitude *)
(* L : wave width *)
(* n : the order N in F formula *)
(* End of variables *)
(* Parsing arguments *)
argv = Rest@$ScriptCommandLine;
Check[
{m, a, L, n} = Interpreter["Number"]/@argv[[;;4]];
type = argv[[5]];
If[Length@argv >= 6,
filename = argv[[6]],
filename = "./psi4_analytical.txt"
],
Print["Error: Check your command line arguments!"];Abort[]
];
(* Set Assumptions *)
$Assumptions = aa > 0 && r > 0 && Pi > theta > 0 &&
2 Pi >= phi >= 0 && t ~Element~ Reals &&
x ~Element~ Reals && y ~Element~ Reals && z ~Element~ Reals;
(* Global Simplify time limit *)
tc = 60
(* Help functions *)
pSimplify[list_] :=
ArrayReshape[
ParallelMap[
Simplify[#, TimeConstraint->tc]&, Flatten@list, Method->"FinestGrained"
],
Dimensions@list
];
psi4analytical[g_, coordinates_, vecn_, vecmb_] :=
Module[
{dim = Length[coordinates], t1, t2,
t3, t4, ig, dg, gamma, dgamma, RiemR, psi4},
dg = D[g, {coordinates}];
ig = Inverse[g] // pSimplify;
t1 =
AbsoluteTiming[
gamma = pSimplify[
ParallelTable[
1/2 Plus @@ ((ig[[i, #]] (dg[[#, j, k]] + dg[[#, k, j]] -
dg[[k, j, #]])) &) /@ Range[dim],
{i, 1, dim}, {j,1, dim}, {k, 1, dim}
]
];
][[1]];
Print["Finish computing gamma, time cost:", t1, "s"];
t2 =
AbsoluteTiming[
dgamma = pSimplify[
D[gamma, {coordinates}]
];
][[1]];
Print["Finish computing dgamma, time cost:", t2, "s"];
t3 =
AbsoluteTiming[
RiemR = ParallelTable[
dgamma[[l, i, k, j]] - dgamma[[l, j, k, i]] +
Plus @@ ((gamma[[#, k, i]] gamma[[l, j, #]] -\
gamma[[#, k, j]] gamma[[l, i, #]]) &) /@ Range[dim],
{i, 1, dim}, {j, 1, dim}, {k, 1, dim}, {l, 1, dim}
];
][[1]];
Print["Finish computing RiemR, time cost:" , t3, "s"];
t4 =
AbsoluteTiming[
psi4 = ((((RiemR . g) . vecmb) . vecn) . vecmb) . vecn;
][[1]];
Print["Finish computing psi4, time cost:" , t4, "s"];
psi4
];
(* set metric *)
Switch[m,
0,
frr = 2 - 3 Sin[theta]^2;
frtheta = -3 Cos[theta] Sin[theta];
frphi = 0;
fthetatheta1 = 3 Sin[theta]^2;
fthetatheta2 = -1; fthetaphi = 0;
fphiphi1 = -fthetatheta1;
fphiphi2 = 3 Sin[theta]^2 - 1;,
1,
frr = Sin[2 theta] Cos[phi];
frtheta = Cos[2 theta] Cos[phi];
frphi = -Cos[theta] Sin[phi];
fthetatheta1 = -frr;
fthetatheta2 = 0;
fthetaphi = -Sin[theta] Sin[phi];
fphiphi1 = -fthetatheta1;
fphiphi2 = -frr;,
-1,
frr = Sin[2 theta] Sin[phi];
frtheta = Cos[2 theta] Sin[phi];
frphi = Cos[theta] Cos[phi];
fthetatheta1 = -frr;
fthetatheta2 = 0;
fthetaphi = Sin[theta] Cos[phi];
fphiphi1 = -fthetatheta1;
fphiphi2 = -frr;,
2,
frr = Sin[theta]^2 Cos[2 phi];
frtheta = Sin[theta] Cos[theta] Cos[2 phi];
frphi = -Sin[theta] Sin[2 phi];
fthetatheta1 = (1 + Cos[theta]^2) Cos[2 phi];
fthetatheta2 = -Cos[2 phi];
fthetaphi = Cos[theta] Sin[2 phi];
fphiphi1 = -fthetatheta1;
fphiphi2 = Cos[theta]^2 Cos[2 phi];,
-2,
frr = Sin[theta]^2 Sin[2 phi];
frtheta = Sin[theta] Cos[theta] Sin[2 phi];
frphi = Sin[theta] Cos[2 phi];
fthetatheta1 = (1 + Cos[theta]^2) Sin[2 phi];
fthetatheta2 = -Sin[2 phi];
fthetaphi = -Cos[theta] Cos[2 phi];
fphiphi1 = -fthetatheta1; fphiphi2 = Cos[theta]^2 Sin[2 phi];,
_,
Print["Error: m must be one of {0,1,2,-1,-2}."];Abort[]
]
h = aa {
{0, 0, 0, 0},
{0, AA[t, r] frr, BB[t, r] frtheta r, BB[t, r] frphi r Sin[theta]},
{0, BB[t, r] frtheta r,
(CC[t, r] fthetatheta1 + AA[t, r] fthetatheta2) r^2,
(AA[t, r] - 2 CC[t, r]) fthetaphi r^2 Sin[theta]},
{0, BB[t, r] frphi r Sin[theta],
(AA[t, r] - 2 CC[t, r]) fthetaphi r^2 Sin[theta],
(CC[t, r] fphiphi1 + AA [t, r] fphiphi2) r^2 Sin[theta]^2}
} // Simplify;
g = DiagonalMatrix[{-1, 1, r^2, r^2 Sin[theta]^2}] + h // Simplify;
rule1 = Switch[type,
"in",
{
AA -> Function[{t, r},3 (F''[t + r]/r^3 - (3 F'[t + r])/r^4 + (3 F[t + r])/r^5)],
BB -> Function[{t, r}, -(-(F'''[t + r]/r^2) + (3 F''[t + r])/r^3 - (6 F'[t + r])/r^4 + (6 F[t + r])/r^5)],
CC -> Function[{t, r}, 1/4 (F''''[t + r]/r - (2 F'''[t + r])/r^2 + (9 F''[t + r])/r^3 - (21 F'[t + r])/r^4 + (21 F[t + r])/r^5)]
},
"out",
{
AA -> Function[{t, r}, 3 (F''[t - r]/r^3 + (3 F'[t - r])/r^4 + (3 F[t - r])/r^5)],
BB -> Function[{t, r}, -(F'''[t - r]/r^2 + (3 F''[t - r])/r^3 + (6 F'[t - r])/r^4 + (6 F[t - r])/r^5)],
CC -> Function[{t, r}, 1/4 (F''''[t - r]/r + (2 F'''[t - r])/r^2 + (9 F''[t - r])/r^3 + (21 F'[t - r])/r^4 + (21 F[t - r])/r^5)]
},
_,
Print["Error: check wave type, can only be in or out"];Abort[]
]
rule2 = F -> Function[L^5 (#/L)^n E^(-(#^2/L^2))]
(* set tetrad *)
vecn = 1/2 {1, -1, 0, 0};
vecmb = 1/(Sqrt[2] r) {0, 0, 1, -(I/Sin[theta])};
(* Calculate psi4 *)
psi4 = psi4analytical[g, {t, r, theta, phi}, vecn, vecmb];
psi4 = psi4 /. {aa->a};
psi4 = psi4 /. rule1;
psi4 = psi4 /. rule2;
psi4 = psi4 /. {t->0};
(* psi4 = Simplify[psi4, TimeConstraint->tc]; *)
Put[psi4, filename]

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(*
Usage: Please set the fowllowing variables from outside as
command line arguments, like this:
wolframscript -file calculate_modes.wl psi4_file r rfilename ifilename
for example:
wolframscript -file calculate_modes.wl psi4.txt 2.5 rmodes.txt imodes.txt
*)
(* Parsing arguments *)
argv = Rest@$ScriptCommandLine;
(* Print[argv] *)
Check[
psi4file = argv[[1]];
(* {l, m, r} = Interpreter["Number"]/@argv[[2;;4]]; *)
r = Interpreter["Number"]@argv[[2]];
rfilename = argv[[3]];
ifilename = argv[[4]];
,
Print["Error: Check your command line arguments!"];Abort[]
];
(* Set Assumptions *)
$Assumptions = Pi > theta > 0 && 2 Pi >= phi >= 0 &&\
Element[l, Reals] && Element[m, Reals] && -l<=m<=l;
Y[s_, l_, m_, theta_, phi_] :=
(-1)^m*
(Sqrt[(((l + m)!*(l - m)!)*(2*l + 1))/((((l + s)!*(l - s)!)*4)*Pi)]*
Sin[theta/2]^(2*l))*
Sum[
(((Binomial[l - s, r]*Binomial[l + s, r + s - m])*(-1)^(l - r - s))*
E^((I*m)*phi))*Cot[theta/2]^(2*r + s - m),
{r, 0, l - s}
]
(* Y[l_, m_, theta_, phi_] := ((-1)^(l + m) E^(I m phi)
Binomial[-2 + l, -2 - m] Cot[theta/2]^(-2 -m)
Sqrt[((1 + 2 l) (l - m)! (l + m)!)/((-2 + l)! (2 + l)!)]
Hypergeometric2F1[-2 - l, -l - m, -1 - m,
-Cot[theta/2]^2] Sin[theta/2]^(2 l))/(2 Sqrt[Pi]) *)
psi4[theta_, phi_] = ToExpression[Import[psi4file, "Text"] ]/.{t->0};
mode[l_, m_] := Module[{f},
(* f = Simplify[Conjugate[Y[-2, l,m,theta,phi] ]*psi4[r,theta,phi]*Sin[theta] ]; *)
f = Conjugate[Y[-2, l,m,theta,phi] ]*psi4[theta,phi]*Sin[theta];
Quiet[NIntegrate[f,{theta, 0, Pi}, {phi, 0, 2 Pi}] ]
]
(* mode[0,0,2.2]//Print *)
(* result = ParallelTable[mode[l,m],{l,1,8},{m,-l,l}]//Flatten; *)
lmlist = Flatten[Table[{l, m}, {l, 1, 8}, {m, -l, l}], 1]
result = ParallelMap[mode@@#&, lmlist]
rmodes = Re/@result;
imodes = Im/@result;
Export[rfilename, rmodes, "Table"]
Export[ifilename, imodes, "Table"]
(* result = mode[l,m]
Print[Re@result, " ", Im@result] *)

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psi4_value.wl Normal file
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(*
Usage: Please set the fowllowing variables from outside as
command line arguments, like this:
wolframscript -file psi4_value.wl psi4_file x y z
for example:
wolframscript -file psi4_value.wl psi4.txt 1.2 2.1 3.4
*)
(* Parsing arguments *)
argv = Rest@$ScriptCommandLine;
(* Print[argv] *)
Check[
psi4file = argv[[1]];
{x, y, z} = ToExpression[argv[[2]]];
,
Print["Error: Check your command line arguments!"];Abort[]
];
psi4[r_, theta_, phi_] = ToExpression[Import[psi4file, "Text"] ]/.{t->0};
result = psi4@@ToSphericalCoordinates[{x,y,z}]
Print[Re@result, " ", Im@result]

304
test_Inv_modes.py Normal file
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import os
import subprocess
import csv
import itertools
import numpy as np
from datetime import datetime
# from wolframclient.evaluation import WolframLanguageSession
# from wolframclient.language import wl, wlexpr
nmesh_exe = "/home/wyj/Code/NR/nmesh/exe/nmesh"
def timestr():
now = datetime.now()
return now.strftime('%y-%m-%d %H:%M:%S')
class nmesh_tester:
def __init__(self, a=1e-8, m=0, N=1, l=1, type="out", ntheta=16, nphi=32,
interp="yes", n=20, luni=0, rlist="", rmodes=[], imodes=[],
rpsi4s=[], ipsi4s=[], mode_file="mode.csv", psi4_file="psi4.csv",
l2_file="l2.csv",
outlist="0.05 0.08 0.1 -0.4 0.42 0.33 1.4 0.2 0.35"):
self.a = a
self.m = m
self.N = N
self.l = l
self.type = type
self.ntheta = ntheta
self.nphi = nphi
self.interp = interp
self.n = n
self.luni = luni
self.rlist = rlist
self.rarray = list(map(float, rlist.split()))
self.outlist = outlist
self.outarray = list(map(float, outlist.split()))
self.rmodes = rmodes
self.imodes = imodes
self.rpsi4s = rpsi4s
self.ipsi4s = ipsi4s
self.mode_file = mode_file
self.psi4_file = psi4_file
self.l2_file = l2_file
if max(max(self.rarray),max(self.outarray)) < 2.0:
self.mesh_type = "CubedSpheres"
else:
self.mesh_type = "Shell"
print(f"[{timestr()}]Start a now tester.")
def run_test(self):
parfile = self.write_parfile()
basename = parfile[:-4]
print(f"[{timestr()}]Written to parfile {parfile}")
print(f"[{timestr()}]Starting running nmesh")
if os.path.exists(basename):
print(f"[{timestr()}]\tHave already runed {parfile}, skipping.")
else:
print(f"[{timestr()}]running: {nmesh_exe} {parfile}")
self.run_nmesh(parfile)
print(f"[{timestr()}]Finished running nmesh")
self.collect_result(basename)
print(f"[{timestr()}]Finished result analysis.")
def write_parfile(self):
filename = f"parfiles/Inv-a{self.a}-m{self.m}-N{self.N}-l{self.l}-{self.type}-"+\
f"nt{self.ntheta}-np{self.nphi}-{self.interp}-"+\
f"n{self.n}-{self.luni}-{self.rlist}.par"
preparfile =\
'''###################################################################
# modules we use
physics = Invariants ADM Teukolsky
###################################################################
# parameters for ADM
ADM_Set1stDerivsInADMconstraints = yes
'''
if self.mesh_type == "Shell":
mesh_parfile =\
f'''###################################################################
# initial mesh
amr_mesh_type = Shell
amr_Shell_rin = {np.floor(min(self.rarray+self.outarray))}
amr_Shell_rout = {np.ceil(max(self.rarray+self.outarray))}
amr_Shell_r1 = 0
amr_n0 = {self.n}
amr_n1 = {self.n}
amr_n2 = {self.n}
amr_luni = {self.luni}
'''
else:
mesh_parfile =\
f'''###################################################################
# initial mesh
amr_mesh_type = 7 CubedSpheres
amr_n0 = {self.n}
amr_n1 = {self.n}
amr_n2 = {self.n}
amr_luni = {self.luni}
'''
teukolsky_parfile =\
f'''###################################################################
# parameters for Teukolsky
Teukolsky_waves_amplitude = {self.a}
Teukolsky_wave_width = {self.l}
Teukolsky_wave_mm = {self.m}
Teukolsky_wave_N = {self.N}
Teukolsky_wave_type = {self.type}
'''
invariants_parfile =\
f'''###################################################################
# parameters for Invariants
Invariants_ntheta = {self.ntheta}
Invariants_nphi = {self.nphi}
Invariants_modes_lmin = 1
Invariants_modes_lmax = 8
Invariants_modes_test = no
Invariants_compute_modes = yes
Invariants_compute_modes_just_interp = {self.interp}
Invariants_modes_r = {self.rlist}
Invariants_psi4_test_0doutput = yes
Invariants_psi4_test_0dout_coordinates = {self.outlist}
'''
output_parfile =\
'''###################################################################
# output
logfile_creation = yes
0douttime = 0.1
0doutput = Invariants_rpsi4 Invariants_ipsi4
1douttime = 0.1
1doutput = Invariants_rpsi4 Invariants_ipsi4
'''
with open(filename, "w") as f:
f.write(preparfile)
f.write(mesh_parfile)
f.write(teukolsky_parfile)
f.write(invariants_parfile)
f.write(output_parfile)
return filename
def run_nmesh(self, parfile):
subprocess.run([nmesh_exe, parfile])
def collect_result(self, basename):
print(f"[{timestr()}]Starting collect and analysis result...")
if not os.path.exists(self.mode_file):
with open(self.mode_file, "w") as f:
csv_writer = csv.writer(f)
csv_writer.writerow(["a", "m", "N", "L", "type", "nt", "np", "interp",
"mesh", "n", "luni", "r", "l", "m", "re_mode",
"im_mode", "re_mode_err", "im_mode_err",
"re_mode_rel_error", "im_mode_rel_err"])
if not os.path.exists(self.psi4_file):
with open(self.psi4_file, "w") as f:
csv_writer = csv.writer(f)
csv_writer.writerow(["a", "m", "N", "L", "type", "mesh", "n", "luni",
"x", "y", "z", "rpsi4", "ipsi4", "rpsi4_err",
"ipsi4_err", "rpsi4_rel_err", "ipsi4_rel_err"])
if not os.path.exists(self.l2_file):
with open(self.l2_file, "w") as f:
csv_writer = csv.writer(f)
csv_writer.writerow(["a", "m", "N", "L", "type", "nt", "np", "interp",
"mesh", "n", "luni", "r", "l2-norm",
"l2-distance", "l2-rel_err"])
print(f"[{timestr()}]\tAnalysing modes...")
with open(self.mode_file, "a") as mode_fp:
csv_writer = csv.writer(mode_fp)
ind = 0
for r in self.rarray:
l2norm = np.dot(self.rmodes, self.rmodes)+\
np.dot(self.imodes, self.imodes)
l2distance = 0
for l in range(1,9):
for m in range(-l, l+1):
output_line = [self.a, self.m, self.N, self.l, self.type,\
self.ntheta, self.nphi, self.interp, self.mesh_type,\
self.n, self.luni, r, l, m]
mode_file = f'{basename}/modes/psi4_r{r}_l{l}_m{m}.t'
with open(mode_file, 'r') as f:
lines = f.readlines()
output_line.extend(map(float,lines[-1].split()[1:]))
rmode = self.rmodes[ind]
imode = self.imodes[ind]
rmode_error = output_line[-2] - rmode
imode_error = output_line[-1] - imode
rmode_rel_error = 'nan' if rmode==0 else rmode_error/rmode
imode_rel_error = 'nan' if imode==0 else imode_error/imode
l2distance += rmode_error**2 + imode_error**2
output_line.extend([rmode_error, imode_error,
rmode_rel_error, imode_rel_error])
ind += 1
csv_writer.writerow(output_line)
with open(self.l2_file, "a") as l2_fp:
l2_writer = csv.writer(l2_fp)
l2_writer.writerow([self.a, self.m, self.N, self.l, self.type,
self.ntheta, self.nphi, self.interp,
self.mesh_type, self.n, self.luni, r, l2norm,
l2distance, l2distance/l2norm])
print(f"[{timestr()}]\tAnalysing 0doutput...")
with open(self.psi4_file, "a") as psi4_fp:
csv_writer = csv.writer(psi4_fp)
n_points = len(self.outarray)//3
for i in range(n_points):
output_line = [self.a, self.m, self.N, self.l, self.type,\
self.mesh_type, self.n, self.luni]
psi4_files = [f"{basename}/Invariants_rpsi4_pt{i}.t",
f"{basename}/Invariants_ipsi4_pt{i}.t"]
with open(psi4_files[0]) as f:
line = f.readline()
line_list = line.split()
Nrpsi4 = float(line_list[1])
output_line.extend(line_list[-3:])
output_line.append(Nrpsi4)
with open(psi4_files[1]) as f:
line = f.readline()
Nipsi4 = float(line.split()[1])
output_line.append(Nipsi4)
rpsi4 = self.rpsi4s[i]
ipsi4 = self.ipsi4s[i]
rpsi4_error = Nrpsi4 - rpsi4
ipsi4_error = Nipsi4 - ipsi4
rpsi4_rel_error = 'nan' if rpsi4==0 else rpsi4_error/rpsi4
ipsi4_rel_error = 'nan' if ipsi4==0 else ipsi4_error/ipsi4
output_line.extend([rpsi4_error, ipsi4_error,
rpsi4_rel_error, ipsi4_rel_error])
csv_writer.writerow(output_line)
rlist = [0.4, 1.3, 1.8]
pointlist = [[0.05, 0.08, 0.1], [-0.4, 0.42, 0.33], [1.4, 0.2, 0.35]]#, [0.01, 0.02, 0.48]]
rlist_str = ' '.join(str(r) for r in rlist)
outlist = ' '.join(str(coord) for point in pointlist for coord in point)
mode_file = "result_modes.csv"
psi4_file = "result_psi4.csv"
l2_file = "result_l2.csv"
for a in [1e-6, 1e-8, 1e-10, 1e-12]:
for m in [0, 1, -1, 2, -2]:
for N in [1, 2, 3, 4]:
for l in [0.5, 1, 2]:
for type in ["in", "out"]:
psi4_analytical = f"psi4_analytical/psi4-m{m}-a{a}-L{l}-N{N}.txt"
if not os.path.exists(psi4_analytical):
print(f"[{timestr()}]Staring calculate psi4 analytically...")
subprocess.run(["wolframscript", "-file", "Teuk_psi4.wl", f"{m}",
f"{a}", f"{l}", f"{N}", f"{type}",
f"{psi4_analytical}"])
print(f"[{timestr()}]Finished calculate psi4 and saved in {psi4_analytical}.")
rmodes = []
imodes = []
for r in rlist:
rmodes_file = f"modes_wolfram/rmode_a{a}-m{m}-N{N}-l{l}-r{r}.txt"
imodes_file = f"modes_wolfram/imode_a{a}-m{m}-N{N}-l{l}-r{r}.txt"
if (not os.path.exists(rmodes_file)) or \
(not os.path.exists(imodes_file)):
print(f"[{timestr()}]Starting calculate modes at r={r}...")
subprocess.run(["wolframscript", "-file", "calculate_modes.wl",
f"{psi4_analytical}", f"{r}",
f"{rmodes_file}", f"{imodes_file}"])
print(f"[{timestr()}]Finished calculate modes and saved in \
{rmodes_file} and {imodes_file}.")
with open(rmodes_file) as f:
rmodes.extend([float(line.strip()) for line in f.readlines()])
with open(imodes_file) as f:
imodes.extend([float(line.strip()) for line in f.readlines()])
rpsi4s = []
ipsi4s = []
for point in pointlist:
print(f"[{timestr()}]Starting calculate psi4 at {point}")
result = subprocess.run(["wolframscript", "-file",
"psi4_value.wl", f"{psi4_analytical}",
"{"+
f"{point[0]}, {point[1]}, {point[2]}"+
"}"],
capture_output=True, text=True)
try:
output = result.stdout.strip().split()
rpsi4s.append(float(output[0].replace("*^", "e")))
ipsi4s.append(float(output[1].replace("*^", "e")))
except:
print(result, output)
raise SystemExit("wrong in wolframscript.")
for ntheta in [16, 32, 64]:
nphi = 2*ntheta
for interp in ["yes"]:
for n in [10, 20, 40]:
for luni in [0, 1, 2]:
tester = nmesh_tester(a, m, N, l, type, ntheta, nphi,
interp, n, luni, rlist_str, rmodes,
imodes, rpsi4s, ipsi4s, mode_file,
psi4_file, l2_file, outlist)
tester.run_test()